Index

Symbols | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

Symbols

"type ahead" autocompletion
.vcf

A

about us
acceptance tests
additions file
additions files
Amazon, [1]
anatomy ontology
ant, [1], [2], [3]
ANT_OPTS
antlib-int.xml
api
api loader
apples
Apples
apps, [1]
aspects
attribute links
authentication, [1]
autocomplete, [1], [2]
autocompletion
AWS, [1]

B

bag-queries
bagqueryrunner
Benjamini Hochberg
BioGRID
biopax
bioseg
biotestmine
bioVersion
blog
bluegenes, [1]
Bonferroni
build failed
build-db, [1]
building database

C

Cambridge
careers
cargo
catalina.out
categories
CDN
chado
chat
chromosome location
cite
class descriptions
class keys
classpath
clients
cloud, [1]
code generation
complexes
components
config
Conflicting values for field error
connection pool
contact
contact form
Content Delivery Network
converter templates
cookies
create account
create-attribute-indexes
create-autocomplete-index
create-bioseg-location-index, [1]
create-chromosome-locations-and-lengths
create-gene-flanking-features
create-intergenic-region-features
create-intron-features
create-overlap-view, [1]
create-references
create-search-index
creating a database
cross reference links
custom data source
Cytoscape

D

Daction
das
DAS
data
data categories
data downloading
data integration, [1], [2]
data integrity, [1]
data labels
data licences
data loading speed
data model, [1], [2]
data model overview
data model with ontology terms
data page
data set
data sets, [1]
data source
data sources, [1]
data tab
database
database building
database properties
database speed
Debian
debugging
default-template-queries.xml
deletions
deploy URL
developers
disease data
displayer examples
do-sources
Drelease
dropdowns, [1]
Dsource

E

EBI
Eclipse
email, [1], [2]
embedding, [1], [2], [3], [4], [5], [6]
emptySessionPath
enrichment widgets
Ensembl
Ensembl Compara
entrez-organism
error messages
EsyN
export, [1]
exporters

F

FASTA, [1], [2]
favicon
fax
featured lists
feedback
FlyBase, [1]
footer
forgot password
funding

G

Galaxy
GBrowse, [1]
gene ontology, [1]
genes
genome browser
genome coordinates
genomic region search
genomic_keyDefs.properties
GFF3, [1]
git, [1]
global additions file
globalAdditionsFile
GMail, [1]
GO, [1], [2]
Google, [1], [2]
Google analytics
gradle, [1], [2]
GRADLE_OPTS
gretty

H

hardware, [1]
header
header links
help, [1], [2], [3]
help location
hide
Hikari
hiring
Holm-Bonferroni
home page
Homologene
homologues
Hypergeometric Distribution

I

ID Map
id resolver
IDE
identifiers, [1]
imVersion
insertions
IntAct, [1]
integration keys
Intellij
interaction viewer
interactions, [1], [2]
interactions widget
InterMine, [1]
InterMine 2.0
InterMine items XML
intermine.log
InterPro
IQL
isoforms

J

JAR version
JARs, [1]
Java, [1], [2]
Java Items API
JAVA_OPTS, [1]
JavaScript, [1]
javascript
javascript embedding, [1], [2], [3], [4], [5]
javascript loader
JBrowse, [1]
JDBC
jobs
JSON-LD markup
jwt

K

KEGG
keys, [1], [2]
keyword search
keyword search examples
keywords

L

LATIN-9
layout
LGPL
licence
link outs
link redirects
links
list analysis page
list analysis page widgets, [1]
list upgrade
list upload
list upload classes
list upload examples
list widgets, [1]
lists, [1]
literature
LOG
logo
logs, [1]
look & feel
LOOKUP
Lucene, [1]

M

Mac, [1]
mailing list
make_mine
malariamine, [1], [2]
maven, [1], [2], [3]
meta description
meta keywords
MGI
mine links
mine properties
model
model merging
model properties
model with ontology terms
multiple mines
Multiple Test Correction
myid.net

N

NCBI, [1]
network viewer, [1]
new releases

O

oauth
oauth2
ObjectStore Summary
OBO, [1]
old identifiers
OMIM
Open ID
openid, [1]
optimisation
optional constraints
organism
organism name
organisms
OrthoDB
orthologues
out of memory error
OutOfMemoryError, [1]
overlappingFeatures
overlaps

P

Panther
paralogues
pathways, [1]
PDB
performance, [1]
Perl, [1]
Perl installation
Perl Items API
permanent URL
PermGen
phone
PNG
popular templates
portal welcome message
postgres
PostgreSQL, [1]
precomputes
primary keys, [1]
priority configuration
priority conflicts
privacy
privacy policy
project title
project XML, [1]
project_build, [1]
project_build script
Protein Data Bank
protein domains, [1]
protein features
protein structures
proteins, [1], [2]
provenance
ProxyReference
PSI
PSQLException
publications, [1]
PubMed
Python

Q

query results
query speed
querybuilder
quick search

R

R
Reactome
redirects
region search, [1]
release notes
release version
releases
report displayers, [1], [2]
report page, [1], [2], [3], [4]
resolvers
REST
restructured text
RGD
robots.txt
RSS
rst
Ruby
running a build

S

search
search engines
search index
semantic versioning
SEO
sequence features
sequence ontology
sequences
session error
sessionCookiePath
SGD
showProperties
SIF
SMTP
SNPs, [1]
SNVs
SO
software dependencies
solaris
Solr, [1]
speed
SQL_ASCII
strand
subtitle
summarise-objectstore
summary
superuser, [1]
SVG
system requirements
systemProp

T

tabs
tagging
take a tour link
taxonomy ID
template comparison
template queries
test model
tests
themes
title
tokens
Tomcat, [1]
tomcat
too many clients error
tools
tracking Mine usage
transfer-sequences
travis
TreeFam
tutorial, [1], [2]
tutorials
twitter

U

Uberon
UniProt, [1], [2]
unit tests
updating InterMine
upgrades
user-agent
userprofile, [1]
UTF-8

V

vacancies
variant file format
variation
vcf
VCF
version
videos

W

web properties
web services
webapp admin
webapp properties
webapp speed
webapp tables
webconfig-model.xml
widgets, [1], [2], [3], [4], [5], [6], [7]
WormBase
writing a custom data source

X

XGMML

Y

Yahoo, [1]

Z

ZFIN