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Guide to Customising Blue GenesΒΆ

Certain features of the blue genes app are controlled by parameters set in the file.

purpose parameters example
default examples for the ID resolver bag.example.identifiers bag.example.identifiers.protein=Q8T3M3,FBpp0081318,FTZ_DROME and bag.example.identifiers=CG9151, FBgn0000099 (one per type)
default separators list.upload.delimiters \n\t,
default regionsearch genomicRegionSearch.* H. sapiens (note: please do not use long format, e.g. Homo sapiens)
default query builder query services.defaults.query <query model="genomic" view="Gene.secondaryIdentifier Gene.symbol Gene.primaryIdentifier" sortOrder="Gene.secondaryIdentifier ASC" ><constraint path="" op="=" value="Homo sapiens" code="A" /></query>
default keyword search quickSearch.identifiers e.g. PPARG, Insulin, rs876498
location of JavaScript tools bluegenes.toolLocation /intermine/tools/node_modules/

Please see Features for details on these parameters.