PubMed¶
Data from pubmed. entire file is downloaded, only taxon IDs set in project.xml will be loaded. if nothing configured, processes all entries.
Types of data loaded¶
genes, publications
How to download the data files¶
How to load the data into your mine¶
project XML example
<source name="pubmed-gene" type="pubmed-gene">
<property name="src.data.dir" location="DATA_DIR/pubmed/" />
<property name="pubmed.organisms" value="7227"/>
<property name="src.data.dir.includes" value="gene2pubmed"/>
</source>