Data Sets¶
Load an XML file with details of your data sets and associated information, e.g. description and URL
Types of data loaded¶
Update data source and data set entries
How to download the data¶
Create your own datasets.xml file with your data in InterMine items XML format and put in your mine’s dbmodel/resources directory so that it’s on your classpath.
<?xml version="1.0"?>
<items>
<item id="09" class="" implements="DataSource">
<attribute name="name" value="NCBI"/>
<attribute name="description" value="National Centre for Biotechnology Information"/>
<attribute name="url" value="https://www.ncbi.nlm.nih.gov"/>
</item>
<item id="10" class="" implements="DataSet">
<attribute name="name" value="Homo sapiens genome sequence"/>
<attribute name="description" value="Release GRCh38 of the Homo sapiens genome sequence"/>
<attribute name="version" value="GRCh38.p12"/>
<attribute name="url" value="https://www.ncbi.nlm.nih.gov"/>
<reference name="dataSource" ref_id="09"/>
</item>
</items>
How to load the data into your mine¶
project XML example
<source name="flymine-static" type="flymine-static">
<property name="src.data.file" location="/data/datasets.xml"/>
</source>