Web pages markup

We have applied structured data in JSON-LD format to InterMine web pages (using Bioschemas.org types and profiles), to improve findability so search engines can give more relevant results to users.

The markup are disabled by default, to enable them set the property markup.webpages.enable to true in the web.properties file.

We have applied the following markup:

Type	Applicable
DataCatalog	Main Home Page
DataSet	Report page for entitites with type DataSet

Home page markup

property	description	example
identifier	The identifier for the mine instance, based on the namespace assigned in the intermine registry [1]	https://registry.intermine.org/flymine
name	The name of the InterMine instance	FlyMine
descrition	The description of the InterMine instance	An integrated database for Drosophila and Anopheles genomics
url	The url of the InterMine instance	http://flymine.org
dataset	The list of the datasets stored in the InterMine instance containing name and url

[1]

When an InterMine instance is added to the registry, an unique and persistent namespace is assigned by the administrator. Some examples of namespaces: flymine, humanmine, flymine.beta. The identifier will be: https://registry.intermine.org/{namespace}. These identifiers are actionable, so if you put https://registry.intermine.org/{namespace} in the address bar of your browser, you will be redirected to URL set in the registry for the FlyMine. If the InterMine instance is not register, the url will be used instead.

Report page markup for DataSet

property	description	example
name	The name of the dataset	FlyAtlas
description	The description of the dataset	Affymetrix microarray-based atlas
identifier	The url of the dataset, if provided, or the permanent URL of the report page	http://www.flyatlas.org/
url	The permanent URL of the report page	http://flymine.org/flymine/dataset:flyatlas