Reactome¶
Types of data loaded¶
proteins, genes, pathways
How to download the data¶
http://www.reactome.org/download/current/UniProt2Reactome_All_Levels.txt
How to load the data into your mine¶
project XML example
<source name="reactome" type="reactome">
<property name="src.data.dir" location="/data/reactome" />
<property name="reactome.organisms" value="9606 10090" />
</source>
This source contains a task to copy the Pathways from the proteins to the related genes. To include this, add this to the post-processing section of your project XML file:
<post-processing>
<post-process name="do-sources" />
...
</post-processing>
See Post processing for more information on post-processing.