Index

Symbols | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

Symbols

"type ahead" autocompletion
.vcf

A

about us
acceptance tests
Amazon
anatomy ontology
ant, [1], [2], [3]
ANT_OPTS
antlib-int.xml
api
api loader
apples
Apples
apps, [1], [2], [3], [4]
aspects
attribute links
authentication
autocomplete, [1]
autocompletion
AWS

B

bag-queries
bagqueryrunner
Benjamini Hochberg
beta testing
BioGRID
biopax
bioseg, [1]
Bonferroni
build-db, [1]
building database

C

Cambridge
careers
catalina.out
categories
CDN
chado
chromosome location
cite
class descriptions
class keys
classpath
clients
cloud
code generation
complexes
components
config
Conflicting values for field error
connection pool
contact
contact form
Content Delivery Network
converter templates
cookies
create account
create-attribute-indexes
create-autocomplete-index
create-bioseg-location-index, [1]
create-chromosome-locations-and-lengths
create-gene-flanking-features
create-intergenic-region-features
create-intron-features
create-overlap-view, [1]
create-references
create-search-index
creating a database
cross reference links
custom data source
Cytoscape

D

Daction
das
DAS
data
data categories
data downloading
data integration, [1], [2]
data integrity, [1]
data labels
data loading speed
data model, [1], [2]
data model overview
data page
data set
data sets
data source
data sources
data tab
database
database building
database properties
database speed
Debian
default-template-queries.xml
deletions
deploy URL
developers
disease data
displayer examples
do-sources
Drelease
dropdowns, [1]
Dsource

E

EBI
Eclipse
email, [1], [2]
embedding, [1], [2], [3], [4], [5], [6], [7], [8], [9]
emptySessionPath
enrichment widgets
Ensembl
Ensembl Compara
entrez-organism
error messages
EsyN
export, [1]
exporters

F

FASTA, [1], [2]
favicon
fax
featured lists
feedback
FlyBase, [1]
footer
forgot password
funding

G

Galaxy
GBrowse, [1]
gene ontology, [1]
genes
genome browser
genome coordinates
genomic region search
GFF3, [1]
git, [1], [2]
GMail, [1]
GO, [1], [2]
Google, [1], [2]
Google analytics
GVF

H

hardware, [1]
header
header links
help, [1], [2]
help location
hide
Hikari
hiring
Holm-Bonferroni
home page
Homologene
homologues
Hypergeometric Distribution

I

id resolver
IDE
identifiers, [1]
insertions
IntAct, [1]
Intellij
interaction viewer
interactions, [1], [2]
interactions widget
InterMine, [1]
InterMine items XML, [1]
intermine.log
InterPro
IQL
isoforms
items XML

J

Java, [1], [2]
Java Items API
JAVA_OPTS, [1]
JavaScript, [1]
javascript embedding, [1], [2], [3], [4], [5], [6], [7], [8]
javascript loader
JBrowse, [1]
jobs
jwt

K

KEGG
keys, [1]
keyword search
keyword search examples
keywords

L

LATIN-9
layout
LGPL
link outs
link redirects
links
list analysis page
list analysis page widgets, [1]
list upgrade
list upload
list upload classes
list upload examples
list widgets, [1]
lists, [1]
literature
LOG
logo
logs, [1]
look & feel
LOOKUP

M

Mac, [1]
mailing list
make_mine
malariamine, [1]
meta description
meta keywords
MGI
mine links
mine properties
model
model merging
model properties
multiple mines
Multiple Test Correction
myid.net

N

NCBI, [1]
network viewer, [1]

O

oauth
oauth2
ObjectStore Summary
OBO, [1]
old identifiers
OMIM
Open ID
openid, [1]
optimisation
optional constraints
Oracle
organism
organism name
organisms
OrthoDB
orthologues
out of memory error
OutOfMemoryError, [1]
overlappingFeatures
overlaps

P

Panther
paralogues
pathways, [1]
PDB
performance, [1]
Perl, [1]
Perl installation
Perl Items API, [1]
PermGen
phone
PNG
popular templates
portal welcome message
postgres
PostgreSQL, [1]
precomputes
primary keys, [1]
priority configuration
priority conflicts
privacy
privacy policy
project title
project XML
project_build
project_build script
Protein Data Bank
protein domains, [1]
protein features
protein structures
proteins, [1], [2]
PSI
PSQLException
publications, [1]
PubMed
Python

Q

query results
query speed
querybuilder
quick search

R

Reactome
redirects
region search, [1]
release notes, [1]
release version
report displayers, [1], [2]
report page, [1], [2], [3], [4]
report widgets
report widgets service
resolvers
REST
restructured text
RGD
robots.txt
RSS
rst
Ruby
running a build

S

search
search engines
SEO
sequence features
sequence ontology
sequences
session error
sessionCookiePath
SGD
showProperties
SIF
site map
SMTP
SNPs, [1]
SNVs
SO
software dependencies
solaris
speed
SQL_ASCII
strand
subtitle
summarise-objectstore
summary
superuser, [1]
SVG
system requirements

T

tabs
tagging
take a tour link
taxonomy ID
template comparison
template queries
test model
tests
themes
title
Tomcat, [1]
too many clients error
tracking Mine usage
transfer-sequences
TreeFam
tutorial, [1], [2]

U

Uberon
UniProt, [1], [2]
unit tests
user-agent
userprofile, [1]
UTF-8

V

vacancies
variant file format
variation
vcf

W

web properties
web services
webapp admin
webapp properties
webapp speed
webapp tables
webconfig-model.xml
widgets, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]
WormBase
writing a custom data source

X

XGMML
XML

Y

Yahoo, [1]

Z

ZFIN