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InterMine items XML

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Identifier Data Sources

You can load MODs ids into your mine using identifier data sources.

Types of data loaded

genes

How to download the data

flybase-identifiers
http://flybase.org/static_pages/downloads/FB20XX_XX/synonyms/fb_synonym_fb_FB20XX_XX.tsv.gz - where FB20XX_XX = the current FlyBase release
zfin-identifiers
http://zfin.org/downloads/ensembl_1_to_1.txt
sgd-identifiers
http://downloads.yeastgenome.org/curation/chromosomal_feature/SGD_features.tab
wormbase-identifiers
query wormbase biomart webservice
mgi-identifiers
ftp://ftp.informatics.jax.org/pub/reports/MGI_Coordinate.rpt
rgd-identifiers
ftp://rgd.mcw.edu/pub/data_release/GENES_RAT.txt

How to load the data into your mine

project XML example

 <source name="flybase-identifiers" type="flybase-identifiers">
   <property name="src.data.dir" location="/DATA/flybase-identifiers"/>
 </source>

 <source name="zfin-identifiers" type="zfin-identifiers">
   <property name="src.data.dir" location="/DATA/zfin-identifiers"/>
 </source>

 <source name="sgd-identifiers" type="sgd-identifiers">
   <property name="src.data.dir" location="/DATA/sgd-identifiers"/>
 </source>

 <source name="wormbase-identifiers" type="wormbase-identifiers">
   <property name="src.data.dir" location="/DATA/worm-identifiers"/>
 </source>

<source name="mgi-identifiers" type="mgi-identifiers">
   <property name="src.data.dir" location="/DATA/mgi-identifiers"/>
 </source>

<source name="rgd-identifiers" type="rgd-identifiers">
   <property name="src.data.dir" location="/DATA/rgd-identifiers"/>
 </source>