Third party tools

• Cytoscape network viewer
  • Configuration
  • Data export format
  • Implementation
• EsyN
  • Configuration
    • Report page
    • List analysis
• Galaxy
  • Enable Galaxy export
  • Customization
  • Export data from InterMine to Galaxy
  • Export identifiers from Galaxy to InterMine
• GBrowse
• Heatmap
  • An example in modMine
    • Expression data source: an data loader example
    • Controller
    • Web page
  • Alternatives
• JBrowse
  • Build Your InterMine Database
  • Install JBrowse
  • Add JBrowse to InterMine
  • Point JBrowse at your InterMine
  • Configuring InterMine’s JBrowse integration