Data Sources

Contents

• Data Source Library
  • Core InterMine sources
  • FlyMine Specific sources
  • HumanMine Specific sources
• Writing your own data source
  • 1. Create bio-sources directory
  • 2. Run make_source script
  • 3. Add your source to your project XML file
  • 3. Write your parser
  • 4. Update the Additions file
  • 5. Update Keys file
  • 6. Build your JAR and put on the classpath
  • 7. Run a build and load your data!
• InterMine Items XML
  • Datatypes
  • APIs
• Id Resolvers
  • ID resolvers available in InterMine
  • Using ID Resolvers in InterMine data converters
  • Using ID Resolvers in your data converters
  • Writing a New ID resolver
  • Future Plans
• Data Licences
  • New DataSet.licence field
  • How is this information being used?
  • Why does it have to be a URL to a standard data licence?
  • How to add licence to an InterMine?
  • None of my data sources have data licences