Data Model

• Data Model Overview
  • Data source and Data set
  • Organism
  • Chromosome location
  • Identifiers
  • Sequence Ontology term
  • so_terms
  • Model Merging
• Model Description
  • What the Model governs
  • Naming conventions
  • The Model File Format
  • The “<model>” Tag
  • The “<class>” Tag
  • The “<attribute>” Tag
  • The “<reference>” and “<collection>” Tags
    • Types of relationship
  • Ontologies
  • A short example
• Using Class and Field Labels
  • Configuring classes and fields individually
  • Configuring classes and fields globally
  • Using these labels in your webapp
  • Using Labels in JavaScript
• Querying over genomic ranges
  • Create the index
  • Create the overlappingFeatures view
• Decorating your model with ontologies
  • Why would you do this? Where is this used?
  • How do you chose an ontology term?
  • How do you add an ontology term to the data model?
  • An example additions.xml snippet with an ontology term