All data required to build an InterMine is included in bio/tutorial/malaria-data.tar.gz. Copy this file to your local directory and extract from the archive.
cp bio/tutorial/malariamine/malaria-data.tar.gz DATA_DIR cd DATA_DIR tar -zxvf malaria-data.tar.gz
Edit the project.xml file so that all occurances of ‘’DATA_DIR’’ point to the your local data directory location.
The malaria genome as gff3 and fasta, originally downloaded from PlasmoDB
UniProt XML with protein information and sequences from SwissProt and Trembl. Downloaded from: http://www.ebi.ac.uk/uniprot/database/download.html and filtered on taxon id 36329.