Database and Web application ======================================================== InterMine is governed by a properties file located in the $HOME/.intermine named `$MINE_NAME.properties`. This page describes which values are set in that file. Example: https://github.com/intermine/biotestmine/blob/master/data/biotestmine.properties Database names and locations ------------------------------ The following properties determine the settings for the production database. This database is used by the build system and the webapp. ======================================= =============== ============================== Property name Example Determines ======================================= =============== ============================== db.production.datasource.serverName server_name server name db.production.datasource.databaseName biotestmine database name db.production.datasource.user postgres_user database username db.production.datasource.password SECRET database password ======================================= =============== ============================== The following properties determine the settings for the items database. This database is used during builds only. ============================================= =============== ================================= Property name Example Determines ============================================= =============== ================================= db.common-tgt-items.datasource.serverName server_name server name db.common-tgt-items.datasource.databaseName biotestmine database name db.common-tgt-items.datasource.user postgres_user database username db.common-tgt-items.datasource.password SECRET database password ============================================= =============== ================================= The following properties determine the settings for the user profile database. This database is used by the webapp only. It holds all user related information, including lists, queries and tags. =================================================== =============== =========================== Property name Example Determines =================================================== =============== =========================== db.userprofile-production.datasource.serverName server_name server name db.userprofile-production.datasource.databaseName biotestmine database name db.userprofile-production.datasource.user postgres_user database username db.userprofile-production.datasource.password SECRET database password =================================================== =============== =========================== Web application name and location ---------------------------------- =============================== ========================================================================= ====================================================================== Property name Example Determines =============================== ========================================================================= ====================================================================== os.production.verboseQueryLog true if true, all queries are logged. Defaults to false webapp.deploy.url http://localhost:8080 location of tomcat server webapp.hostname localhost name of host webapp.path biotestmine location of path of webapp webapp.manager TOMCAT_USER tomcat username, needed to deploy webapp webapp.password TOMCAT_PWD tomcat password, needed to deploy webapp webapp.baseurl http://www.flymine.org home link; used by client side JavaScript AJAX requests superuser.account test_user@mail_account account name for superuser superuser.initialPassword secret password used when account is created project.standalone true run with associated web site. Defaults to false project.title biotestmine name of mine project.subTitle An example of InterMine.bio with data from Plasmodium falciparum text that appears in the header at the top of the page project.releaseVersion tutorial text that appears at the top of the page next to the mine name project.sitePrefix http://www.flymine.org various URLs use this as the prefix project.helpLocation http://www.flymine.org/help various URLs use this as the prefix =============================== ========================================================================= ====================================================================== .. warning:: `webapp.baseurl` and `webapp.path` must be correct or else your queries will not run Email ------ Emails are sent to users when they create an account, forget their password, or use the contact form. ====================== ========================================================= =================================================================== Property name Example Determines ====================== ========================================================= =================================================================== mail.host localhost mail host to use mail.from account@my_mail_host "from" email address mail.subject Welcome to biotestmine "subject" for email send when account created mail.text You have successfully created an account on BioTestMine "body" for email send when account created feedback.destination test_user@mail_address recipient of feedback form located on bottom of every page ====================== ========================================================= =================================================================== This is the normal mailer. There is a different configuration for SMTP. Multiple versions of a mine ---------------------------- It's possible to use several properties files by adding a suffix. Here's an example scenario: #. add a suffix to the name of your property file: * `biotestmine.properties.dev` - points to the development database and a webapp #. use `-Dorg.gradle.project.release=dev` # `dev` is the suffix on the properties filename .. code-block:: bash # build the database specified in dev properties file ./gradlew builddb -Dorg.gradle.project.release=dev # deploy the webapp specified in dev properties file ./gradlew cargoReDeployRemote -Dorg.gradle.project.release=dev .. index:: multiple mines, Drelease, email, forgot password, feedback, database properties, webapp properties, title, project title, subtitle, release version, help location, contact form, create account, superuser, deploy URL, mine properties, SMTP