InterMine documentation
================================

`InterMine <http://www.intermine.org/>`_ is an open source data warehouse built specifically for the integration and analysis of complex biological data.

Developed by the `Micklem lab <http://www.micklemlab.org/>`_ at the `University of Cambridge <https://www.gen.cam.ac.uk/>`_, InterMine enables the creation of biological databases accessed by sophisticated web query tools. Parsers are provided for integrating data from many common biological data sources and formats, and there is a framework for adding your own data. InterMine includes an attractive, user-friendly web interface that works 'out of the box' and can be easily customised for your specific needs, as well as a powerful, scriptable web-service API to allow programmatic access to your data.


Contents
--------

.. toctree::
    :maxdepth: 2

    system-requirements/index
    get-started/index
    intermine/index
    data-model/index
    database/index
    webapp/index
    web-services/index
    embedding/index
    api/index
    support/index
    about/index
    help/index

Indices
----------------------------------
 
* :ref:`genindex`

`This guide in a PDF format <https://media.readthedocs.org/pdf/intermine/latest/intermine.pdf>`_

* :ref:`search`