Identifier Data Sources
================================

You can load MODs ids into your mine using identifier data sources.

Types of data loaded
--------------------

genes

How to download the data 
---------------------------

flybase-identifiers
	http://flybase.org/downloads/archivedata - you can download different versions

zfin-identifiers
	http://zfin.org/downloads/ensembl_1_to_1.txt

sgd-identifiers
	http://downloads.yeastgenome.org/curation/chromosomal_feature/SGD_features.tab

wormbase-identifiers
	query wormbase biomart webservice

mgi-identifiers
	ftp://ftp.informatics.jax.org/pub/reports/MGI_Coordinate.rpt

rgd-identifiers
	ftp://rgd.mcw.edu/pub/data_release/GENES_RAT.txt



How to load the data into your mine
--------------------------------------

project XML example
 
.. code-block:: xml

    <source name="flybase-identifiers" type="flybase-identifiers">
      <property name="src.data.dir" location="/DATA/flybase-identifiers"/>
    </source>   
   
    <source name="zfin-identifiers" type="zfin-identifiers">
      <property name="src.data.dir" location="/DATA/zfin-identifiers"/>
    </source> 
   
    <source name="sgd-identifiers" type="sgd-identifiers">
      <property name="src.data.dir" location="/DATA/sgd-identifiers"/>
    </source> 

    <source name="wormbase-identifiers" type="wormbase-identifiers">
      <property name="src.data.dir" location="/DATA/worm-identifiers"/>
    </source>

   <source name="mgi-identifiers" type="mgi-identifiers">
      <property name="src.data.dir" location="/DATA/mgi-identifiers"/>
    </source>
   
   <source name="rgd-identifiers" type="rgd-identifiers">
      <property name="src.data.dir" location="/DATA/rgd-identifiers"/>
    </source>


.. index:: identifiers, MGI, RGD, SGD, ZFIN, FlyBase