GO Annotation ================================ Loads gene association files that link GO terms to genes or proteins. Types of data loaded -------------------- genes, proteins, GO terms, publications, GO evidence How to download the data --------------------------- The data is available from http://www.geneontology.org Configuration file (optional) ------------------------------- There is an optional configuration file that let's you determine which type of object you create, and which identifier field you set. If your annotation file annotates genes and uses the primary identfier, these are the default values and you do not need to update the configuration file. ================= =================================== ========================================================== parameter definition possible values ================= =================================== ========================================================== typeAnnotated class of what is being annotated gene (default) or protein identifier which field to set primaryIdentifier (default), symbol, or primaryAccession readcolumn [1]_ which column to use for identifier identifier (default) or symbol ================= =================================== ========================================================== .. [1] See http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/ for column descriptioins .. code-block:: properties # an example entry 7165.typeAnnotated=protein 7165.identifier=primaryAccession How to load the data into your mine -------------------------------------- project XML example .. code-block:: xml .. index:: GO, gene ontology, OBO