Index

Symbols

"type ahead" autocompletion

.vcf

A

about us acceptance tests additions file additions files Amazon, [1] anatomy ontology ant, [1], [2], [3] ANT_OPTS antlib-int.xml api

api loader apples Apples apps, [1] aspects attribute links authentication, [1] autocomplete, [1], [2] autocompletion AWS, [1]

B

bag-queries bagqueryrunner Benjamini Hochberg BioGRID biopax bioseg biotestmine, [1]

bioVersion blog bluegenes, [1] Bonferroni build failed build-db, [1] building database

C

Cambridge careers cargo catalina.out categories CDN chado chat chromosome location cite class descriptions class keys classpath clients cloud, [1] code generation complexes components config Conflicting values for field error connection pool

contact contact form Content Delivery Network contribution guide converter templates cookies create account create-attribute-indexes create-autocomplete-index create-bioseg-location-index, [1] create-chromosome-locations-and-lengths create-gene-flanking-features create-intergenic-region-features create-intron-features create-overlap-view, [1] create-references create-search-index creating a database cross reference links custom data source Cytoscape

D

Daction das DAS data data categories data downloading data integration, [1], [2] data integrity, [1] data labels data licences data loading speed data model, [1], [2] data model overview data model with ontology terms data page data set data sets, [1] data source

data sources, [1] data tab database database building database properties database speed Debian debugging default-template-queries.xml deletions deploy URL developers disease data displayer examples do-sources Drelease dropdowns, [1] Dsource

E

EBI Eclipse email, [1], [2] embedding, [1], [2], [3], [4], [5], [6] emptySessionPath enrichment widgets Ensembl Compara

Entrez entrez-organism error messages EsyN export, [1] exporters

F

FASTA, [1], [2] favicon fax featured lists feedback

FlyBase, [1] footer forgot password funding

G

Galaxy GBrowse, [1] gene gene ontology, [1] genes genome browser genome coordinates genomic region search genomic_keyDefs.properties get involved Getting started

GFF3, [1] git, [1] global additions file globalAdditionsFile GMail, [1] GO, [1], [2] Google, [1], [2] Google analytics gradle, [1], [2] GRADLE_OPTS gretty

H

hardware, [1] header header links help, [1], [2], [3] help location hide Hikari

hiring Holm-Bonferroni home page Homologene homologues Hypergeometric Distribution

I

ID Map id resolver IDE identifiers, [1] imVersion insertions IntAct, [1] integration keys Intellij interaction viewer

interactions, [1], [2] interactions widget InterMine, [1] InterMine 2.0 InterMine items XML InterMine JARs intermine.log InterPro IQL isoforms

J

JAR version, [1] JARs, [1] Java, [1], [2] Java Items API JAVA_OPTS, [1] JavaScript, [1] javascript javascript embedding, [1], [2], [3], [4], [5]

javascript loader JBrowse, [1] JCenter JDBC jobs JSON-LD markup jwt

K

KEGG keys, [1], [2] keyword search

keyword search examples keywords

L

LATIN-9 layout LGPL licence link outs link redirects links list analysis page list analysis page widgets, [1] list upgrade list upload

list upload classes list upload examples list widgets, [1] lists, [1] literature LOG logo logs, [1] look & feel LOOKUP Lucene, [1]

M

Mac, [1] mailing list make_mine malariamine, [1], [2] maven, [1], [2], [3] Maven, [1] meta description meta keywords MGI

mine links mine properties model model merging model properties model with ontology terms multiple mines Multiple Test Correction myid.net

N

NCBI, [1], [2] network viewer, [1]

new releases

O

oauth oauth2 ObjectStore Summary OBO, [1] old identifiers OMIM Open ID openid, [1] optimisation optional constraints

organism organism name organisms OrthoDB orthologues out of memory error OutOfMemoryError, [1] overlappingFeatures overlaps

P

Panther paralogues pathways, [1] performance, [1] Perl, [1] Perl installation Perl Items API permanent URL PermGen phone PNG popular templates portal welcome message postgres PostgreSQL, [1] precomputes primary keys, [1] priority configuration

priority conflicts privacy privacy policy project title project XML, [1] project_build, [1] project_build script protein domains, [1] protein features proteins, [1], [2] provenance ProxyReference PSI PSQLException publications, [1] PubMed Python

Q

query results query speed querybuilder

quick search Quick start

R

R Reactome redirects region search, [1] release notes release version releases report displayers, [1], [2] report page, [1], [2], [3], [4] resolvers

REST restructured text RGD roadmap robots.txt RSS rst Ruby running a build

S

search search engines search index semantic versioning, [1] SEO sequence features sequence ontology sequences session error sessionCookiePath SGD showProperties SIF SMTP SNPs

SNVs SO software dependencies solaris Solr, [1] speed SQL_ASCII strand subtitle summarise-objectstore summary superuser, [1] SVG system requirements systemProp

T

tabs tagging take a tour link taxonomy ID template comparison template queries test model tests themes title tokens

Tomcat, [1] tomcat too many clients error tools tracking Mine usage transfer-sequences travis TreeFam tutorial, [1], [2] tutorials twitter

U

Uberon UniProt, [1], [2] unit tests updating InterMine

upgrades user-agent userprofile, [1] UTF-8

V

vacancies variant file format vcf

version, [1] videos

W

web properties web services webapp admin webapp properties webapp speed

webapp tables webconfig-model.xml widgets, [1], [2], [3], [4], [5], [6], [7] WormBase writing a custom data source

X

XGMML

Y

Yahoo, [1]

Z

ZFIN