This tool takes gene interaction data from Intermine and visualises it using cytoscape.js, a fabulous network visualisation tool. It replaces the flash-based CytoscapeWeb network viewer found in previous versions of the tool.
<reportdisplayer javaClass="org.intermine.bio.web.displayer.CytoscapeNetworkDisplayer"
jspName="model/cytoscapeNetworkDisplayer.jsp"
replacesFields="interactions"
placement="Interactions"
types="Gene,Protein"/>
This tool accesses the list of gene interactions for the target gene by calling a web service, sorting the data into edges and nodes, and inserting them into an HTML canvas for display. It can also be used externally to the report page as a stand alone application. For external setup instructions, see the Cytoscape Intermine repo, and the standalone app demo page
Dependencies: This tool uses imjs to query the data, and imtables to display table data.
A short list of Java files found on the Intermine side: