Certain features of the blue genes app are controlled by parameters set in the web.properties file. These properties are also used in the current webapp user interface.
| purpose | parameters | example |
|---|---|---|
| default examples for the ID resolver | bag.example.identifiers | bag.example.identifiers.protein=Q8T3M3,FBpp0081318,FTZ_DROME and bag.example.identifiers=CG9151, FBgn0000099 (one per type) |
| default separators | list.upload.delimiters | \n\t, |
| default regionsearch | genomicRegionSearch.* | H. sapiens (note: please do not use long format, e.g. Homo sapiens) |
| default query builder query | services.defaults.query | <query model="genomic" view="Gene.secondaryIdentifier Gene.symbol Gene.primaryIdentifier Gene.organism.name" sortOrder="Gene.secondaryIdentifier ASC" ><constraint path="Gene.organism.name" op="=" value="Homo sapiens" code="A" /></query> |
| default keyword search | quickSearch.identifiers | e.g. PPARG, Insulin, rs876498 |
Please see Features for details on these parameters.
To specify a location for your JavaScript tools to be used in your BlueGenes instance, set this parameter in your ~/.intermine/$MINE.property file.
| purpose | parameters | example |
|---|---|---|
| location of JavaScript tools | bluegenes.toolLocation | /intermine/tools/node_modules/ |
Please see Database and Web application for details on this property file.
