Load SNP data from a downloaded data file.
SNPs
First you will need the variation data from Ensembl, which are available via MySQL databases. Download the Ensembl file from their FTP site:
Example:
Download and unzip the file.
<source name="ensembl-snp" type="ensembl-snp">
<property name="src.data.dir" location="/data/variation/ensembl/current" />
<property name="ensembl-snp.includes" value="Homo_sapiens_incl_consequences.gvf" />
</source>