Index

Symbols

"type ahead" autocompletion

.vcf

A

about us acceptance tests Amazon anatomy ontology ant, [1], [2], [3] ANT_OPTS antlib-int.xml api api loader

apples Apples apps, [1], [2], [3], [4] aspects attribute links authentication, [1] autocomplete, [1] autocompletion AWS

B

bag-queries bagqueryrunner Benjamini Hochberg BioGRID biopax bioseg, [1]

blog blue genes Bonferroni build failed build-db, [1] building database

C

Cambridge careers catalina.out categories CDN chado chat chromosome location cite class descriptions class keys classpath clients cloud code generation complexes components config Conflicting values for field error connection pool

contact contact form Content Delivery Network converter templates cookies create account create-attribute-indexes create-autocomplete-index create-bioseg-location-index, [1] create-chromosome-locations-and-lengths create-gene-flanking-features create-intergenic-region-features create-intron-features create-overlap-view, [1] create-references create-search-index creating a database cross reference links custom data source Cytoscape

D

Daction das DAS data data categories data downloading data integration, [1], [2] data integrity, [1] data labels data loading speed data model, [1], [2] data model overview data page data set data sets, [1] data source data sources, [1]

data tab database database building database properties database speed Debian debugging default-template-queries.xml deletions deploy URL developers disease data displayer examples do-sources Drelease dropdowns, [1] Dsource

E

EBI Eclipse email, [1], [2] embedding, [1], [2], [3], [4], [5], [6], [7], [8], [9] emptySessionPath enrichment widgets Ensembl

Ensembl Compara entrez-organism error messages EsyN export, [1] exporters

F

FASTA, [1], [2] favicon fax featured lists feedback

FlyBase, [1] footer forgot password funding

G

Galaxy GBrowse, [1] gene ontology, [1] genes genome browser genome coordinates genomic region search

GFF3, [1] git, [1], [2] GMail, [1] GO, [1], [2] Google, [1], [2] Google analytics GVF

H

hardware, [1] header header links help, [1], [2] help location hide Hikari

hiring Holm-Bonferroni home page Homologene homologues Hypergeometric Distribution

I

ID Map id resolver IDE identifiers, [1] insertions IntAct, [1] Intellij interaction viewer

interactions, [1], [2] interactions widget InterMine, [1] InterMine items XML intermine.log InterPro IQL isoforms

J

Java, [1], [2] Java Items API JAVA_OPTS, [1] JavaScript, [1] javascript embedding, [1], [2], [3], [4], [5], [6], [7], [8]

javascript loader JBrowse, [1] jobs jwt

K

KEGG keys, [1] keyword search

keyword search examples keywords

L

LATIN-9 layout LGPL link outs link redirects links list analysis page list analysis page widgets, [1] list upgrade list upload

list upload classes list upload examples list widgets, [1] lists, [1] literature LOG logo logs, [1] look & feel LOOKUP

M

Mac, [1] mailing list make_mine malariamine, [1] meta description meta keywords MGI mine links

mine properties model model merging model properties multiple mines Multiple Test Correction myid.net

N

NCBI, [1]

network viewer, [1]

O

oauth oauth2 ObjectStore Summary OBO, [1] old identifiers OMIM Open ID openid, [1] optimisation optional constraints

Oracle organism organism name organisms OrthoDB orthologues out of memory error OutOfMemoryError, [1] overlappingFeatures overlaps

P

Panther paralogues pathways, [1] PDB performance, [1] Perl, [1] Perl installation Perl Items API PermGen phone PNG popular templates portal welcome message postgres PostgreSQL, [1] precomputes primary keys, [1] priority configuration priority conflicts

privacy privacy policy project title project XML project_build project_build script Protein Data Bank protein domains, [1] protein features protein structures proteins, [1], [2] provenance ProxyReference PSI PSQLException publications, [1] PubMed Python

Q

query results query speed

querybuilder quick search

R

Reactome redirects region search, [1] release notes release version report displayers, [1], [2] report page, [1], [2], [3], [4] report widgets

report widgets service resolvers REST RGD robots.txt RSS Ruby running a build

S

search search engines SEO sequence features sequence ontology sequences session error sessionCookiePath SGD showProperties SIF SMTP SNPs, [1]

SNVs SO software dependencies solaris speed SQL_ASCII strand subtitle summarise-objectstore summary superuser, [1] SVG system requirements

T

tabs tagging take a tour link taxonomy ID template comparison template queries test model tests themes

title tokens Tomcat, [1] too many clients error tracking Mine usage transfer-sequences TreeFam tutorial, [1], [2] twitter

U

Uberon UniProt, [1], [2] unit tests

user-agent userprofile, [1] UTF-8

V

vacancies variant file format

variation vcf

W

web properties web services webapp admin webapp properties webapp speed

webapp tables webconfig-model.xml widgets, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] WormBase writing a custom data source

X

XGMML

Y

Yahoo, [1]

Z

ZFIN