Data Model

• Data Model Overview
  • Data source and Data set
  • Organism
  • Chromosome location
  • Identifiers
  • Sequence Ontology term
  • so_terms
• Model Description
  • What the Model governs
  • Naming conventions
  • The Model File Format
  • The “<model>” Tag
  • The “<class>” Tag
  • The “<attribute>” Tag
  • The “<reference>” and “<collection>” Tags
  • A short example
• Using Class and Field Labels
  • Configuring classes and fields individually
  • Configuring classes and fields globally
  • Using these labels in your webapp
  • Using Labels in JavaScript
• Querying over genomic ranges
  • Install BIOSEG (Postgres versions 9.1 and older only)
  • Create the index
  • Create the overlappingFeatures view